DIMACS Workshop on Bio-computing, Genomics and Epigenomics
September 13, 2012
DIMACS Center, CoRE Building, Rutgers University
- Organizing Committee:
- Gyan Bhanot, Rutgers University, MB&B/Physics and CINJ
- Shridar Ganesan, CINJ
- Sam Gu, Rutgers University, MB&B
- Konstantin Mischaikow, Rutgers University, Math
- Alexandre Morozov, Rutgers University, Physics
- Alexander Schliep, Rutgers University, CS
- Anirvan Sengupta, Rutgers University, Physics
- Eduardo Sontag, Rutgers University, Math
- Advisory Committee:
- Linda Brzustowicz, Chair - Genetics, Rutgers University
- Haym Hirsh, Chair - Computer Science, Rutgers University
- Mike Kiledjian, Chair - Cell Bio and Neuroscience, Rutgers University
- Vincenzo Pirrotta, Chair - MB&B, Rutgers University
- Ron Ransome, Chair- Physics, Rutgers University
- Michael Vogelius, Chair - Mathematics, Rutgers University
Workshop Program:
Thursday, September 13, 2012
8:00 - 8:50 Registration and Breakfast
8:50 - 9:00 Opening remarks
Gyan Bhanot, Rutgers University, MB&B/Physics and CINJ
9:00 - 9:45 Mathematical Ideas in the Life Sciences: Modeling Cellular Clocks
John Harer, Duke University
9:45 - 10:30 Biophysical models of chromatin
Alexandre Morozov, Rutgers University, Physics
10:30 - 11:00 Coffee Break
11:00 - 11:45 Exploring Disease Models in Light of Genomics
Chang Chan, CINJ
11:45 - 12:30 Scale-invariant responses in adapting biological systems
Eduardo Sontag, Rutgers University, Math
12:30 - 12:40 Director's Welcome
Rebecca Wright, DIMACS Director
12:40 - 2:30 Lunch and Poster Session
2:30 - 3:15 Cellular simulations of morphogenesis
Troy Shinbrot, Rutgers University, BME
3:15 - 4:00 Cancer Cell Metabolism: The Warburg Effect Revisited
Alexei Vasquez, CINJ
4:00 - 4:30 Coffee Break
4:30 - 5:00 Long-range periodicity and an unusual DNA packaging mechanism
Sam Gu, Rutgers University, MB&B
5:00 - 5:15 Summary and plans for the future
Vincenzo Pirrotta, Rutgers University, MB&B
5:15 Adjourn
Posters
- On estimating the risk of a new H5N1 Pandemic
Aatish Bhatia, Rutgers University, Physics
- Developing a New Model for Codon Usage Bias
Dan Cardinale, Rutgers University, Microbiology and Molecular Genetics
- Evolutionary analysis of the loss of pre-coat protein in
begomoviruses
Eric Ho, Rutgers University, Ecology, Evolution and Natural Resources
- A Path-Based Approach to Sequence Evolution
Michael Manhart, Rutgers University, Physics
- Proliferation and tissue-remodeling define partially independent
meta-pathways in cancer
Elke Markert, IAS/CINJ
- Topological Measurement of Protein Compressibility via Persistence
Diagrams
Vidit Nanda, Rutgers University, Math
- Mycobacterium tuberculosis employs multiple mechanisms to
dysregulate lipid metabolism and disrupt cholesterol homeostasis in
host macrophages
Evgeni Nikolaev, Rutgers University, Math
- Fold Change Detection (FCD) in Enzymatic Networks
Maja Skataric, Rutgers University, Math
- SLIQ: Simple Linear Inequalities for Efficient Contig Scaffolding
Rajat Shuvro Roy, Rutgers University, CS
- Identifying Lipid pathway Selection in the Maasai
Kshitij Wagh, Rutgers University, Physics
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Document last modified on September 10, 2012.